Software

July1

The interface to the program AMTRaK as described in the PLoS ONE report by Chaphalkar et al.

AMTraK: An improved kymograph generator and analyzing program. Writen in a MATLAB using some of the ImageProcessing library toolbox functions. Also available as a bundled program. More details also in our paper:

Chaphalkar AR, Jain K, Gangan MS, Athale CA* (2016) Automated Multi-Peak Tracking Kymography (AMTraK): A Tool to Quantify Sub-Cellular Dynamics with Sub-Pixel Accuracy. PLoS ONE 11(12): e0167620. doi:10.1371/journal.pone.0167620

Rosette plot by Chaitanya Athale (2008) for MATLAB. This simple plotting tool uses the rose plot (popular in circular statistics) to plot frequencies of known period in a circular manner.

Rosette Plot using MATLAB

Rosette Plot using MATLAB

ImageJ batch converter: This code was written because of a constant need to renumber, rename and copy into new formats large clusters of image-files from microscopy. Feel free to use it and let me know if you find bugs. Certainly if you improve on it, do please let me know. [CODE]

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